J4_2ZM6_002

3D structure

PDB id

2ZM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

2ZM6|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_2ZM6_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1165

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

2ZM6|1|A|G|142
2ZM6|1|A|A|143
2ZM6|1|A|G|144
*
2ZM6|1|A|C|178
2ZM6|1|A|A|179
2ZM6|1|A|U|180
2ZM6|1|A|G|181
2ZM6|1|A|U|182
2ZM6|1|A|G|183
*
2ZM6|1|A|C|194
2ZM6|1|A|A|195
2ZM6|1|A|A|196
2ZM6|1|A|A|197
2ZM6|1|A|G|198
*
2ZM6|1|A|C|219
2ZM6|1|A|G|220
2ZM6|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20