3D structure

PDB id
2ZM6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GAG*CAUGUG*CAAAG*CGC
Length
17 nucleotides
Bulged bases
2ZM6|1|A|A|197
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_2ZM6_002 not in the Motif Atlas
Homologous match to J4_4LFB_002
Geometric discrepancy: 0.1165
The information below is about J4_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_88771.1
Basepair signature
cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW
Number of instances in this motif group
1

Unit IDs

2ZM6|1|A|G|142
2ZM6|1|A|A|143
2ZM6|1|A|G|144
*
2ZM6|1|A|C|178
2ZM6|1|A|A|179
2ZM6|1|A|U|180
2ZM6|1|A|G|181
2ZM6|1|A|U|182
2ZM6|1|A|G|183
*
2ZM6|1|A|C|194
2ZM6|1|A|A|195
2ZM6|1|A|A|196
2ZM6|1|A|A|197
2ZM6|1|A|G|198
*
2ZM6|1|A|C|219
2ZM6|1|A|G|220
2ZM6|1|A|C|221

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain T
30S ribosomal protein S20

Coloring options:


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