J4_3BBX_001

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

3BBX|1|B|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3BBX_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1635

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

3BBX|1|B|C|268
3BBX|1|B|C|269
*
3BBX|1|B|G|370
3BBX|1|B|A|371
3BBX|1|B|G|372
3BBX|1|B|U|373
3BBX|1|B|A|374
3BBX|1|B|G|375
*
3BBX|1|B|U|399
3BBX|1|B|G|400
3BBX|1|B|A|401
3BBX|1|B|A|402
3BBX|1|B|U|403
3BBX|1|B|A|404
3BBX|1|B|U|405
3BBX|1|B|G|406
*
3BBX|1|B|C|421
3BBX|1|B|A|422
3BBX|1|B|A|423
3BBX|1|B|G|424

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain Z

50S ribosomal protein L31