J4_3CC2_003

3D structure

PDB id

3CC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CAGCGAUAG*CG*CUGUC*GG

Length

18 nucleotides

Bulged bases

3CC2|1|0|G|1378, 3CC2|1|0|U|1380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CC2_003 not in the Motif Atlas

Homologous match to J4_4V9F_003

Geometric discrepancy: 0.02

The information below is about J4_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_89787.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

3CC2|1|0|C|1374
3CC2|1|0|A|1375
3CC2|1|0|G|1376
3CC2|1|0|C|1377
3CC2|1|0|G|1378
3CC2|1|0|A|1379
3CC2|1|0|U|1380
3CC2|1|0|A|1381
3CC2|1|0|G|1382
*
3CC2|1|0|C|1400
3CC2|1|0|G|1401
*
3CC2|1|0|C|1721
3CC2|1|0|U|1722
3CC2|1|0|G|1723
3CC2|1|0|U|1724
3CC2|1|0|C|1725
*
3CC2|1|0|G|2050
3CC2|1|0|G|2051

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain P

50S ribosomal protein L19e

Chain R

50S ribosomal protein L22P

Chain X

50S ribosomal protein L31e