J4_3CC2_009

3D structure

PDB id

3CC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUAUG*UUGAC*GAC*GUG

Length

16 nucleotides

Bulged bases

3CC2|1|0|U|2322, 3CC2|1|0|U|2419

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CC2_009 not in the Motif Atlas

Homologous match to J4_4V9F_009

Geometric discrepancy: 0.0351

The information below is about J4_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

3CC2|1|0|C|2319
3CC2|1|0|U|2320
3CC2|1|0|A|2321
3CC2|1|0|U|2322
3CC2|1|0|G|2323
*
3CC2|1|0|U|2377
3CC2|1|0|U|2378
3CC2|1|0|G|2379
3CC2|1|0|A|2380
3CC2|1|0|C|2381
*
3CC2|1|0|G|2407
3CC2|1|0|A|2408
3CC2|1|0|C|2409
*
3CC2|1|0|G|2418
3CC2|1|0|U|2419
3CC2|1|0|G|2420

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain N

50S ribosomal protein L18P

Chain Q

50S ribosomal protein L21e