J4_3CCL_007

3D structure

PDB id

3CCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535C. Density for Anisomycin is visible but not included in model.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GACUG*CAUAG*UGAAU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CCL_007 not in the Motif Atlas

Homologous match to J4_4V9F_007

Geometric discrepancy: 0.044

The information below is about J4_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

3CCL|1|0|G|1828
3CCL|1|0|A|1829
3CCL|1|0|C|1830
3CCL|1|0|U|1831
3CCL|1|0|G|1832
*
3CCL|1|0|C|1844
3CCL|1|0|A|1845
3CCL|1|0|U|1846
3CCL|1|0|A|1847
3CCL|1|0|G|1848
*
3CCL|1|0|U|1883
3CCL|1|0|G|1884
3CCL|1|0|A|1885
3CCL|1|0|A|1886
3CCL|1|0|U|1887
*
3CCL|1|0|A|2015
3CCL|1|0|U|2016
3CCL|1|0|U|2017
3CCL|1|0|A|2018
3CCL|1|0|A|2019
3CCL|1|0|C|2020

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae