J4_3CCM_007

3D structure

PDB id

3CCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation G2611U

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GACUG*CAUAG*UGAAU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CCM_007 not in the Motif Atlas

Homologous match to J4_4V9F_007

Geometric discrepancy: 0.0518

The information below is about J4_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_07509.2

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

3

Unit IDs

3CCM|1|0|G|1828
3CCM|1|0|A|1829
3CCM|1|0|C|1830
3CCM|1|0|U|1831
3CCM|1|0|G|1832
*
3CCM|1|0|C|1844
3CCM|1|0|A|1845
3CCM|1|0|U|1846
3CCM|1|0|A|1847
3CCM|1|0|G|1848
*
3CCM|1|0|U|1883
3CCM|1|0|G|1884
3CCM|1|0|A|1885
3CCM|1|0|A|1886
3CCM|1|0|U|1887
*
3CCM|1|0|A|2015
3CCM|1|0|U|2016
3CCM|1|0|U|2017
3CCM|1|0|A|2018
3CCM|1|0|A|2019
3CCM|1|0|C|2020

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae