J4_3CCM_009

3D structure

PDB id

3CCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation G2611U

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUAUG*UUGAC*GAC*GUG

Length

16 nucleotides

Bulged bases

3CCM|1|0|U|2322, 3CCM|1|0|U|2419

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CCM_009 not in the Motif Atlas

Homologous match to J4_4V9F_009

Geometric discrepancy: 0.0477

The information below is about J4_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

3CCM|1|0|C|2319
3CCM|1|0|U|2320
3CCM|1|0|A|2321
3CCM|1|0|U|2322
3CCM|1|0|G|2323
*
3CCM|1|0|U|2377
3CCM|1|0|U|2378
3CCM|1|0|G|2379
3CCM|1|0|A|2380
3CCM|1|0|C|2381
*
3CCM|1|0|G|2407
3CCM|1|0|A|2408
3CCM|1|0|C|2409
*
3CCM|1|0|G|2418
3CCM|1|0|U|2419
3CCM|1|0|G|2420

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain N

50S ribosomal protein L18P

Chain Q

50S ribosomal protein L21e