J4_3CCQ_001

3D structure

PDB id

3CCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488U

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAG*CGAAUAAC*GAAG

Length

20 nucleotides

Bulged bases

3CCQ|1|0|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CCQ_001 not in the Motif Atlas

Homologous match to J4_4V9F_001

Geometric discrepancy: 0.0353

The information below is about J4_4V9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

3CCQ|1|0|C|239
3CCQ|1|0|C|240
*
3CCQ|1|0|G|379
3CCQ|1|0|A|380
3CCQ|1|0|G|381
3CCQ|1|0|U|382
3CCQ|1|0|A|383
3CCQ|1|0|G|384
*
3CCQ|1|0|C|405
3CCQ|1|0|G|406
3CCQ|1|0|A|407
3CCQ|1|0|A|408
3CCQ|1|0|U|409
3CCQ|1|0|A|410
3CCQ|1|0|A|411
3CCQ|1|0|C|412
*
3CCQ|1|0|G|428
3CCQ|1|0|A|429
3CCQ|1|0|A|430
3CCQ|1|0|G|431

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain M

50S ribosomal protein L15e