3D structure

PDB id
3CCQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488U
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
GGUUC*GGUUAG*CC*GUCCGUAC
Length
21 nucleotides
Bulged bases
3CCQ|1|0|U|1447
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_3CCQ_004 not in the Motif Atlas
Homologous match to J4_4V9F_004
Geometric discrepancy: 0.0287
The information below is about J4_4V9F_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69051.6
Basepair signature
cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

3CCQ|1|0|G|1416
3CCQ|1|0|G|1417
3CCQ|1|0|U|1418
3CCQ|1|0|U|1419
3CCQ|1|0|C|1420
*
3CCQ|1|0|G|1444
3CCQ|1|0|G|1445
3CCQ|1|0|U|1446
3CCQ|1|0|U|1447
3CCQ|1|0|A|1448
3CCQ|1|0|G|1449
*
3CCQ|1|0|C|1513
3CCQ|1|0|C|1514
*
3CCQ|1|0|G|1672
3CCQ|1|0|U|1673
3CCQ|1|0|C|1674
3CCQ|1|0|C|1675
3CCQ|1|0|G|1676
3CCQ|1|0|U|1677
3CCQ|1|0|A|1678
3CCQ|1|0|C|1679

Current chains

Chain 0
23S RIBOSOMAL RNA

Nearby chains

Chain 1
50S ribosomal protein L37e
Chain 2
50S ribosomal protein L39e
Chain P
50S ribosomal protein L19e
Chain S
50S ribosomal protein L23P
Chain V
50S ribosomal protein L29P

Coloring options:


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