J4_3CCV_003

3D structure

PDB id

3CCV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation G2616A

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAGCGAUAG*CG*CUGUC*GG

Length

18 nucleotides

Bulged bases

3CCV|1|0|G|1378, 3CCV|1|0|U|1380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CCV_003 not in the Motif Atlas

Homologous match to J4_4V9F_003

Geometric discrepancy: 0.0405

The information below is about J4_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75426.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

3CCV|1|0|C|1374
3CCV|1|0|A|1375
3CCV|1|0|G|1376
3CCV|1|0|C|1377
3CCV|1|0|G|1378
3CCV|1|0|A|1379
3CCV|1|0|U|1380
3CCV|1|0|A|1381
3CCV|1|0|G|1382
*
3CCV|1|0|C|1400
3CCV|1|0|G|1401
*
3CCV|1|0|C|1721
3CCV|1|0|U|1722
3CCV|1|0|G|1723
3CCV|1|0|U|1724
3CCV|1|0|C|1725
*
3CCV|1|0|G|2050
3CCV|1|0|G|2051

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain P

50S ribosomal protein L19e

Chain R

50S ribosomal protein L22P

Chain X

50S ribosomal protein L31e