J4_3CD6_007

3D structure

PDB id

3CD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-cystal of large Ribosomal Subunit mutant G2616A with CC-Puromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GACUG*CAUAG*UGAAU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CD6_007 not in the Motif Atlas

Homologous match to J4_4V9F_007

Geometric discrepancy: 0.0782

The information below is about J4_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

3CD6|1|0|G|1828
3CD6|1|0|A|1829
3CD6|1|0|C|1830
3CD6|1|0|U|1831
3CD6|1|0|G|1832
*
3CD6|1|0|C|1844
3CD6|1|0|A|1845
3CD6|1|0|U|1846
3CD6|1|0|A|1847
3CD6|1|0|G|1848
*
3CD6|1|0|U|1883
3CD6|1|0|G|1884
3CD6|1|0|A|1885
3CD6|1|0|A|1886
3CD6|1|0|U|1887
*
3CD6|1|0|A|2015
3CD6|1|0|U|2016
3CD6|1|0|U|2017
3CD6|1|0|A|2018
3CD6|1|0|A|2019
3CD6|1|0|C|2020

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae