J4_3CF5_010

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CF5_010 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.1992

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

3CF5|1|X|C|2264
3CF5|1|X|A|2265
3CF5|1|X|A|2266
3CF5|1|X|A|2267
3CF5|1|X|G|2268
*
3CF5|1|X|U|2322
3CF5|1|X|U|2323
3CF5|1|X|G|2324
3CF5|1|X|A|2325
3CF5|1|X|C|2326
*
3CF5|1|X|G|2349
3CF5|1|X|G|2350
3CF5|1|X|G|2351
*
3CF5|1|X|C|2360
3CF5|1|X|G|2361
3CF5|1|X|G|2362

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain 1

50S RIBOSOMAL PROTEIN L33

Chain 3

50S RIBOSOMAL PROTEIN L35

Chain T

50S RIBOSOMAL PROTEIN L27