J4_3CMA_003

3D structure

PDB id

3CMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAGCGAUAG*CG*CUGUC*GG

Length

18 nucleotides

Bulged bases

3CMA|1|0|G|1378, 3CMA|1|0|U|1380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CMA_003 not in the Motif Atlas

Homologous match to J4_4V9F_003

Geometric discrepancy: 0.0618

The information below is about J4_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75426.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

3CMA|1|0|C|1374
3CMA|1|0|A|1375
3CMA|1|0|G|1376
3CMA|1|0|C|1377
3CMA|1|0|G|1378
3CMA|1|0|A|1379
3CMA|1|0|U|1380
3CMA|1|0|A|1381
3CMA|1|0|G|1382
*
3CMA|1|0|C|1400
3CMA|1|0|G|1401
*
3CMA|1|0|C|1721
3CMA|1|0|U|1722
3CMA|1|0|G|1723
3CMA|1|0|U|1724
3CMA|1|0|C|1725
*
3CMA|1|0|G|2050
3CMA|1|0|G|2051

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain P

50S ribosomal protein L19e

Chain R

50S ribosomal protein L22P

Chain X

50S ribosomal protein L31e