J4_3CME_007

3D structure

PDB id

3CME (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GACUG*CAUAG*UGAAU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CME_007 not in the Motif Atlas

Homologous match to J4_4V9F_007

Geometric discrepancy: 0.0531

The information below is about J4_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

3CME|1|0|G|1828
3CME|1|0|A|1829
3CME|1|0|C|1830
3CME|1|0|U|1831
3CME|1|0|G|1832
*
3CME|1|0|C|1844
3CME|1|0|A|1845
3CME|1|0|U|1846
3CME|1|0|A|1847
3CME|1|0|G|1848
*
3CME|1|0|U|1883
3CME|1|0|G|1884
3CME|1|0|A|1885
3CME|1|0|A|1886
3CME|1|0|U|1887
*
3CME|1|0|A|2015
3CME|1|0|U|2016
3CME|1|0|U|2017
3CME|1|0|A|2018
3CME|1|0|A|2019
3CME|1|0|C|2020

Current chains

Chain 0

50S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae