J4_3CXC_009

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAUG*UUGAC*GAC*GUG

Length

16 nucleotides

Bulged bases

3CXC|1|0|U|2322, 3CXC|1|0|U|2419

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3CXC_009 not in the Motif Atlas

Homologous match to J4_4V9F_009

Geometric discrepancy: 0.0495

The information below is about J4_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

3CXC|1|0|C|2319
3CXC|1|0|U|2320
3CXC|1|0|A|2321
3CXC|1|0|U|2322
3CXC|1|0|G|2323
*
3CXC|1|0|U|2377
3CXC|1|0|U|2378
3CXC|1|0|G|2379
3CXC|1|0|A|2380
3CXC|1|0|C|2381
*
3CXC|1|0|G|2407
3CXC|1|0|A|2408
3CXC|1|0|C|2409
*
3CXC|1|0|G|2418
3CXC|1|0|U|2419
3CXC|1|0|G|2420

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 2

RIBOSOMAL PROTEIN L44E

Chain M

RIBOSOMAL PROTEIN L18

Chain P

RIBOSOMAL PROTEIN L21E