J4_3DS7_002

3D structure

PDB id

3DS7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an RNA-2'-deoxyguanosine complex

Experimental method

X-RAY DIFFRACTION

Resolution

1.85 Å

Loop

Sequence

ACAAU*AG*CC*GACU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3DS7_002 not in the Motif Atlas

Homologous match to J4_3IVN_001

Geometric discrepancy: 0.1064

The information below is about J4_3IVN_001

Detailed Annotation

Purine riboswitch junction

Broad Annotation

No text annotation

Motif group

J4_07491.4

Basepair signature

cWW-F-F-tWS-F-F-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

3DS7|1|B|A|221
3DS7|1|B|C|222
3DS7|1|B|A|223
3DS7|1|B|A|224
3DS7|1|B|U|225
*
3DS7|1|B|A|245
3DS7|1|B|G|246
*
3DS7|1|B|C|253
3DS7|1|B|C|254
*
3DS7|1|B|G|272
3DS7|1|B|A|273
3DS7|1|B|C|274
3DS7|1|B|U|275

Current chains

Chain B

67-MER

Nearby chains

Chain A

Purine riboswitch