J4_3F2Q_001

3D structure

PDB id

3F2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the FMN riboswitch bound to FMN

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGGGGCAG*CGACC*GAC*GGAUGAGAG

Length

25 nucleotides

Bulged bases

3F2Q|1|X|U|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3F2Q_001 not in the Motif Atlas

Homologous match to J4_3F2X_001

Geometric discrepancy: 0.054

The information below is about J4_3F2X_001

Detailed Annotation

FMN riboswitch junction

Broad Annotation

No text annotation

Motif group

J4_70672.1

Basepair signature

cWW-tSH-F-F-F-F-F-F-cSW-F-tHS-cWW-cWW-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

3F2Q|1|X|C|8
3F2Q|1|X|G|9
3F2Q|1|X|G|10
3F2Q|1|X|G|11
3F2Q|1|X|G|12
3F2Q|1|X|C|13
3F2Q|1|X|A|14
3F2Q|1|X|G|15
*
3F2Q|1|X|C|27
3F2Q|1|X|G|28
3F2Q|1|X|A|29
3F2Q|1|X|C|30
3F2Q|1|X|C|31
*
3F2Q|1|X|G|84
3F2Q|1|X|A|85
3F2Q|1|X|C|86
*
3F2Q|1|X|G|97
3F2Q|1|X|G|98
3F2Q|1|X|A|99
3F2Q|1|X|U|100
3F2Q|1|X|G|101
3F2Q|1|X|A|102
3F2Q|1|X|G|103
3F2Q|1|X|A|104
3F2Q|1|X|G|105

Current chains

Chain X

FMN riboswitch

Nearby chains