J4_3F4H_001

3D structure

PDB id

3F4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the FMN riboswitch bound to roseoflavin

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGGGGCAG*CGACC*GAC*GGAUGAGAG

Length

25 nucleotides

Bulged bases

3F4H|1|Y|U|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

FMN riboswitch

Broad Annotation

No text annotation

Motif group

J4_31894.1

Basepair signature

cWW-tSH-F-F-F-F-F-F-cSW-F-tHS-cWW-cWW-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

3F4H|1|X|C|8
3F4H|1|X|G|9
3F4H|1|X|G|10
3F4H|1|X|G|11
3F4H|1|X|G|12
3F4H|1|X|C|13
3F4H|1|X|A|14
3F4H|1|X|G|15
*
3F4H|1|X|C|27
3F4H|1|X|G|28
3F4H|1|X|A|29
3F4H|1|X|C|30
3F4H|1|X|C|31
*
3F4H|1|Y|G|84
3F4H|1|Y|A|85
3F4H|1|Y|C|86
*
3F4H|1|Y|G|97
3F4H|1|Y|G|98
3F4H|1|Y|A|99
3F4H|1|Y|U|100
3F4H|1|Y|G|101
3F4H|1|Y|A|102
3F4H|1|Y|G|103
3F4H|1|Y|A|104
3F4H|1|Y|G|105

Current chains

Chain X

FMN riboswitch

Chain Y

FMN riboswitch

Nearby chains