3F4H Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3F4H_001 | 1/X/17:25 | T-loop with 2 bulged bases not stacked | geometric HL_3F2X_001 HL_13999.3 | |
| HL_3F4H_002 | 1/X/36:43 | T-loop with unstacked turn | ||
| HL_3F4H_004 | 1/Y/68:76 | T-loop with 2 bulged bases not stacked | geometric HL_5C45_003 NA | |
| HL_3F4H_005 | 1/Y/88:95 | T-loop with unstacked turn |
Problematic loops
No problematic loops
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3F4H_001 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_3F4H_001 | 1/X/8:15, 1/X/27:31, 1/Y/84:86, 1/Y/97:105 | FMN riboswitch junction | ||
| J4_3F4H_002 | 1/X/32:33, 1/X/46:49, 1/Y/60:64, 1/Y/80:83 | FMN riboswitch junction |
Problematic loops
No problematic loops
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