Motif J4_31894.1 Version J4_31894.1 of this group appears in releases 3.2 to 3.9
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | break | 14 | 15 | 16 | break | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 1-24 | 2-23 | 5-13 | 6-10 | 7-10 | 8-9 | 13-14 | 15-18 | 16-17 | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_3F4H_001 | 3F4H | 0.0000 | 1 | FMN riboswitch | X+Y | FMN riboswitch | C | 8 | G | 9 | G | 10 | G | 11 | G | 12 | C | 13 | A | 14 | G | 15 | * | C | 27 | G | 28 | A | 29 | C | 30 | C | 31 | * | G | 84 | A | 85 | C | 86 | * | G | 97 | G | 98 | A | 99 | G | 101 | A | 102 | G | 103 | A | 104 | G | 105 | cWW | ntSH | cSW | tHS | cWW | cWW | cWW | cWW | |
| 2 | J4_3F2X_001 | 3F2X | 0.0831 | 1 | FMN riboswitch | X | FMN riboswitch | C | 8 | G | 9 | G | 10 | G | 11 | G | 12 | C | 13 | A | 14 | G | 15 | * | C | 27 | G | 28 | A | 29 | C | 30 | C | 31 | * | G | 84 | A | 85 | C | 86 | * | G | 97 | G | 98 | A | 99 | G | 101 | A | 102 | G | 103 | A | 104 | G | 105 | cWW | tSH | ncsS | cSW | tHS | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGGGCAG*CGACC*GAC*GGAUGAGAG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGGGCA*GAC*A*GAUGAGA | 2 |
Release history
| Release | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 |
|---|---|---|---|---|---|---|---|---|
| Date | 2018-02-09 | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- FMN riboswitch (2)
- Basepair signature
- cWW-tSH-F-F-F-F-F-F-cSW-F-tHS-cWW-cWW-cWW-F-cWW-F
- Heat map statistics
- Min 0.08 | Avg 0.04 | Max 0.08
Coloring options: