3D structure

PDB id
3G4S (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal structure of Tiamulin bound to the large ribosomal subunit
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CAGCGAUAG*CG*CUGUC*GG
Length
18 nucleotides
Bulged bases
3G4S|1|0|G|1378, 3G4S|1|0|U|1380, 3G4S|1|0|A|1381
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_3G4S_003 not in the Motif Atlas
Homologous match to J4_4V9F_003
Geometric discrepancy: 0.0741
The information below is about J4_4V9F_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_89787.1
Basepair signature
cWW-F-cWW-F-F-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
1

Unit IDs

3G4S|1|0|C|1374
3G4S|1|0|A|1375
3G4S|1|0|G|1376
3G4S|1|0|C|1377
3G4S|1|0|G|1378
3G4S|1|0|A|1379
3G4S|1|0|U|1380
3G4S|1|0|A|1381
3G4S|1|0|G|1382
*
3G4S|1|0|C|1400
3G4S|1|0|G|1401
*
3G4S|1|0|C|1721
3G4S|1|0|U|1722
3G4S|1|0|G|1723
3G4S|1|0|U|1724
3G4S|1|0|C|1725
*
3G4S|1|0|G|2050
3G4S|1|0|G|2051

Current chains

Chain 0
23S ribosomal RNA

Nearby chains

Chain P
50S ribosomal protein L19e
Chain R
50S ribosomal protein L22P
Chain X
50S ribosomal protein L31e

Coloring options:


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