J4_3G4S_006

3D structure

PDB id

3G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Tiamulin bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GACUG*CAUAG*UGAAU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3G4S_006 not in the Motif Atlas

Homologous match to J4_4V9F_007

Geometric discrepancy: 0.0935

The information below is about J4_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_07509.2

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

3

Unit IDs

3G4S|1|0|G|1828
3G4S|1|0|A|1829
3G4S|1|0|C|1830
3G4S|1|0|U|1831
3G4S|1|0|G|1832
*
3G4S|1|0|C|1844
3G4S|1|0|A|1845
3G4S|1|0|U|1846
3G4S|1|0|A|1847
3G4S|1|0|G|1848
*
3G4S|1|0|U|1883
3G4S|1|0|G|1884
3G4S|1|0|A|1885
3G4S|1|0|A|1886
3G4S|1|0|U|1887
*
3G4S|1|0|A|2015
3G4S|1|0|U|2016
3G4S|1|0|U|2017
3G4S|1|0|A|2018
3G4S|1|0|A|2019
3G4S|1|0|C|2020

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae