J4_3G6E_009

3D structure

PDB id

3G6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Homoharringtonine bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUAUG*UUGAC*GAC*GUG

Length

16 nucleotides

Bulged bases

3G6E|1|0|U|2322, 3G6E|1|0|U|2419

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3G6E_009 not in the Motif Atlas

Homologous match to J4_4V9F_009

Geometric discrepancy: 0.0519

The information below is about J4_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

3G6E|1|0|C|2319
3G6E|1|0|U|2320
3G6E|1|0|A|2321
3G6E|1|0|U|2322
3G6E|1|0|G|2323
*
3G6E|1|0|U|2377
3G6E|1|0|U|2378
3G6E|1|0|G|2379
3G6E|1|0|A|2380
3G6E|1|0|C|2381
*
3G6E|1|0|G|2407
3G6E|1|0|A|2408
3G6E|1|0|C|2409
*
3G6E|1|0|G|2418
3G6E|1|0|U|2419
3G6E|1|0|G|2420

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain N

50S ribosomal protein L18P

Chain Q

50S ribosomal protein L21e