J4_3I55_007

3D structure

PDB id

3I55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Mycalamide A Bound to the Large Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

GACUG*CAUAG*UGAAU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3I55_007 not in the Motif Atlas

Homologous match to J4_4V9F_007

Geometric discrepancy: 0.0813

The information below is about J4_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

3I55|1|0|G|1828
3I55|1|0|A|1829
3I55|1|0|C|1830
3I55|1|0|U|1831
3I55|1|0|G|1832
*
3I55|1|0|C|1844
3I55|1|0|A|1845
3I55|1|0|U|1846
3I55|1|0|A|1847
3I55|1|0|G|1848
*
3I55|1|0|U|1883
3I55|1|0|G|1884
3I55|1|0|A|1885
3I55|1|0|A|1886
3I55|1|0|U|1887
*
3I55|1|0|A|2015
3I55|1|0|U|2016
3I55|1|0|U|2017
3I55|1|0|A|2018
3I55|1|0|A|2019
3I55|1|0|C|2020

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae