J4_3I56_008

3D structure

PDB id

3I56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Triacetyloleandomcyin Bound to the Large Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

3I56|1|0|U|2012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3I56_008 not in the Motif Atlas

Homologous match to J4_4V9F_008

Geometric discrepancy: 0.0457

The information below is about J4_4V9F_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.2

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

6

Unit IDs

3I56|1|0|C|1889
3I56|1|0|U|1890
3I56|1|0|G|1891
*
3I56|1|0|C|1946
3I56|1|0|G|1947
*
3I56|1|0|C|1965
3I56|1|0|U|1966
3I56|1|0|U|1967
3I56|1|0|A|1968
3I56|1|0|A|1969
3I56|1|0|G|1970
3I56|1|0|G|1971
3I56|1|0|U|1972
3I56|1|0|A|1973
3I56|1|0|G|1974
*
3I56|1|0|U|2008
3I56|1|0|G|2009
3I56|1|0|A|2010
3I56|1|0|A|2011
3I56|1|0|U|2012
3I56|1|0|G|2013

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P