J4_3I56_009
3D structure
- PDB id
- 3I56 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal structure of Triacetyloleandomcyin Bound to the Large Ribosomal Subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CUAUG*UUGAC*GAC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 3I56|1|0|U|2322, 3I56|1|0|U|2419
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3I56_009 not in the Motif Atlas
- Homologous match to J4_4V9F_009
- Geometric discrepancy: 0.0514
- The information below is about J4_4V9F_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
3I56|1|0|C|2319
3I56|1|0|U|2320
3I56|1|0|A|2321
3I56|1|0|U|2322
3I56|1|0|G|2323
*
3I56|1|0|U|2377
3I56|1|0|U|2378
3I56|1|0|G|2379
3I56|1|0|A|2380
3I56|1|0|C|2381
*
3I56|1|0|G|2407
3I56|1|0|A|2408
3I56|1|0|C|2409
*
3I56|1|0|G|2418
3I56|1|0|U|2419
3I56|1|0|G|2420
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L44E
- Chain N
- 50S ribosomal protein L18P
- Chain Q
- 50S ribosomal protein L21e
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