J4_3J0L_001
3D structure
- PDB id
- 3J0L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- AUAG*CAG*CGUGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 3J0L|1|V|U|8, 3J0L|1|V|U|47, 3J0L|1|V|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J0L_001 not in the Motif Atlas
- Homologous match to J4_3WQY_001
- Geometric discrepancy: 0.2488
- The information below is about J4_3WQY_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
3J0L|1|V|A|7
3J0L|1|V|U|8
3J0L|1|V|A|9
3J0L|1|V|G|10
*
3J0L|1|V|C|25
3J0L|1|V|A|26
3J0L|1|V|G|27
*
3J0L|1|V|C|43
3J0L|1|V|G|44
3J0L|1|V|U|45
3J0L|1|V|G|46
3J0L|1|V|U|47
3J0L|1|V|C|48
3J0L|1|V|C|49
*
3J0L|1|V|G|65
3J0L|1|V|U|66
Current chains
- Chain V
- tRNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain c
- 40S ribosomal RNA fragment
- Chain d
- 40S ribosomal RNA fragment
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