J4_3J0P_001
3D structure
- PDB id
- 3J0P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 10.6 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 3J0P|1|W|U|47, 3J0P|1|W|C|48
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J0P_001 not in the Motif Atlas
- Homologous match to J4_4V9Q_031
- Geometric discrepancy: 0.1962
- The information below is about J4_4V9Q_031
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
3J0P|1|W|G|7
3J0P|1|W|U|8
3J0P|1|W|G|9
3J0P|1|W|G|10
*
3J0P|1|W|C|25
3J0P|1|W|G|26
3J0P|1|W|U|27
*
3J0P|1|W|A|43
3J0P|1|W|A|44
3J0P|1|W|G|45
3J0P|1|W|G|46
3J0P|1|W|U|47
3J0P|1|W|C|48
3J0P|1|W|G|49
*
3J0P|1|W|C|65
3J0P|1|W|C|66
Current chains
- Chain W
- tRNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain 3
- 60S ribosomal RNA fragment
- Chain d
- 40S ribosomal RNA fragment
Coloring options: