J4_3J0Q_001

3D structure

PDB id

3J0Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

10.6 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

3J0Q|1|W|U|47, 3J0Q|1|W|C|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J0Q_001 not in the Motif Atlas

Homologous match to J4_4V9Q_031

Geometric discrepancy: 0.1961

The information below is about J4_4V9Q_031

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

3J0Q|1|W|G|7
3J0Q|1|W|U|8
3J0Q|1|W|G|9
3J0Q|1|W|G|10
*
3J0Q|1|W|C|25
3J0Q|1|W|G|26
3J0Q|1|W|U|27
*
3J0Q|1|W|A|43
3J0Q|1|W|A|44
3J0Q|1|W|G|45
3J0Q|1|W|G|46
3J0Q|1|W|U|47
3J0Q|1|W|C|48
3J0Q|1|W|G|49
*
3J0Q|1|W|C|65
3J0Q|1|W|C|66

Current chains

Chain W

tRNA

Nearby chains

Chain d

40S ribosomal RNA fragment