J4_3J28_004

3D structure

PDB id

3J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

12.9 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J28_004 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.3728

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

3J28|1|N|G|142
3J28|1|N|A|143
3J28|1|N|G|144
*
3J28|1|N|C|178
3J28|1|N|A|179
3J28|1|N|U|180
3J28|1|N|A|181
3J28|1|N|A|182
3J28|1|N|C|183
3J28|1|N|G|184
*
3J28|1|N|C|193
3J28|1|N|C|194
3J28|1|N|A|195
3J28|1|N|A|196
3J28|1|N|A|197
3J28|1|N|G|198
*
3J28|1|N|U|219
3J28|1|N|G|220
3J28|1|N|C|221

Current chains

Chain N

16S rRNA

Nearby chains