J4_3J2C_009
3D structure
- PDB id
- 3J2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.2 Å
Loop
- Sequence
- GAG*CAUAACG*CCAAAG*UGC
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J2C_009 not in the Motif Atlas
- Homologous match to J4_5J7L_002
- Geometric discrepancy: 0.3504
- The information below is about J4_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_01665.1
- Basepair signature
- cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
3J2C|1|N|G|142
3J2C|1|N|A|143
3J2C|1|N|G|144
*
3J2C|1|N|C|178
3J2C|1|N|A|179
3J2C|1|N|U|180
3J2C|1|N|A|181
3J2C|1|N|A|182
3J2C|1|N|C|183
3J2C|1|N|G|184
*
3J2C|1|N|C|193
3J2C|1|N|C|194
3J2C|1|N|A|195
3J2C|1|N|A|196
3J2C|1|N|A|197
3J2C|1|N|G|198
*
3J2C|1|N|U|219
3J2C|1|N|G|220
3J2C|1|N|C|221
Current chains
- Chain N
- 16S rRNA body domain
Nearby chains
- Chain O
- Small subunit ribosomal RNA fragment; SSU rRNA fragment
Coloring options: