J4_3J2H_003

3D structure

PDB id

3J2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

18.8 Å

Loop

Sequence

GCG*CGAAAG*CCGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

3J2H|1|N|C|576, 3J2H|1|N|A|815, 3J2H|1|N|C|817, 3J2H|1|N|G|818, 3J2H|1|N|A|819, 3J2H|1|N|U|820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J2H_003 not in the Motif Atlas

Homologous match to J4_4LFB_003

Geometric discrepancy: 0.3359

The information below is about J4_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

3J2H|1|N|G|575
3J2H|1|N|C|576
3J2H|1|N|G|577
*
3J2H|1|N|C|764
3J2H|1|N|G|765
3J2H|1|N|A|766
3J2H|1|N|A|767
3J2H|1|N|A|768
3J2H|1|N|G|769
*
3J2H|1|N|C|810
3J2H|1|N|C|811
3J2H|1|N|G|812
3J2H|1|N|U|813
3J2H|1|N|A|814
3J2H|1|N|A|815
3J2H|1|N|A|816
3J2H|1|N|C|817
3J2H|1|N|G|818
3J2H|1|N|A|819
3J2H|1|N|U|820
3J2H|1|N|G|821
*
3J2H|1|N|C|879
3J2H|1|N|C|880

Current chains

Chain N

16S rRNA

Nearby chains