J4_3J2H_004

3D structure

PDB id

3J2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

18.8 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J2H_004 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.4137

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

3J2H|1|N|G|142
3J2H|1|N|A|143
3J2H|1|N|G|144
*
3J2H|1|N|C|178
3J2H|1|N|A|179
3J2H|1|N|U|180
3J2H|1|N|A|181
3J2H|1|N|A|182
3J2H|1|N|C|183
3J2H|1|N|G|184
*
3J2H|1|N|C|193
3J2H|1|N|C|194
3J2H|1|N|A|195
3J2H|1|N|A|196
3J2H|1|N|A|197
3J2H|1|N|G|198
*
3J2H|1|N|U|219
3J2H|1|N|G|220
3J2H|1|N|C|221

Current chains

Chain N

16S rRNA

Nearby chains