J4_3J6Y_002
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 3J6Y|1|1S|A|623, 3J6Y|1|1S|A|1026, 3J6Y|1|1S|U|1029, 3J6Y|1|1S|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J6Y_002 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.1291
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
3J6Y|1|1S|A|622
3J6Y|1|1S|A|623
3J6Y|1|1S|G|624
*
3J6Y|1|1S|C|975
3J6Y|1|1S|G|976
3J6Y|1|1S|A|977
3J6Y|1|1S|A|978
3J6Y|1|1S|A|979
3J6Y|1|1S|G|980
*
3J6Y|1|1S|C|1021
3J6Y|1|1S|C|1022
3J6Y|1|1S|A|1023
3J6Y|1|1S|U|1024
3J6Y|1|1S|A|1025
3J6Y|1|1S|A|1026
3J6Y|1|1S|A|1027
3J6Y|1|1S|C|1028
3J6Y|1|1S|U|1029
3J6Y|1|1S|A|1030
3J6Y|1|1S|U|1031
3J6Y|1|1S|G|1032
*
3J6Y|1|1S|U|1103
3J6Y|1|1S|U|1104
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 11
- 40S ribosomal protein S11
- Chain 13
- 40S ribosomal protein S13
- Chain 14
- 40S ribosomal protein S14
- Chain 22
- 40S ribosomal protein S22
- Chain 23
- 40S ribosomal protein S23
- Chain 26
- 40S ribosomal protein S26
- Chain 81
- 60S ribosomal protein L41
- Chain 83
- 60S ribosomal protein L43
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