J4_3J6Y_003
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 3J6Y|1|2S|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J6Y_003 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1766
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
3J6Y|1|2S|U|112
3J6Y|1|2S|C|113
*
3J6Y|1|2S|G|267
3J6Y|1|2S|A|268
3J6Y|1|2S|G|269
3J6Y|1|2S|U|270
3J6Y|1|2S|C|271
3J6Y|1|2S|G|272
*
3J6Y|1|2S|C|293
3J6Y|1|2S|U|294
3J6Y|1|2S|A|295
3J6Y|1|2S|A|296
3J6Y|1|2S|G|297
3J6Y|1|2S|U|298
3J6Y|1|2S|G|299
*
3J6Y|1|2S|U|316
3J6Y|1|2S|A|317
3J6Y|1|2S|A|318
3J6Y|1|2S|A|319
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 53
- 60S ribosomal protein L13
- Chain 55
- 60S ribosomal protein L15
- Chain 75
- 60S ribosomal protein L35
- Chain 76
- 60S ribosomal protein L36
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