J4_3J6Y_005
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CAAAUAU*AG*UGAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 3J6Y|1|2S|A|1452, 3J6Y|1|2S|U|1455
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J6Y_005 not in the Motif Atlas
- Homologous match to J4_8C3A_003
- Geometric discrepancy: 0.1487
- The information below is about J4_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J6Y|1|2S|C|1451
3J6Y|1|2S|A|1452
3J6Y|1|2S|A|1453
3J6Y|1|2S|A|1454
3J6Y|1|2S|U|1455
3J6Y|1|2S|A|1456
3J6Y|1|2S|U|1457
*
3J6Y|1|2S|A|1475
3J6Y|1|2S|G|1476
*
3J6Y|1|2S|U|1877
3J6Y|1|2S|G|1878
3J6Y|1|2S|A|1879
3J6Y|1|2S|U|1880
*
3J6Y|1|2S|A|2352
3J6Y|1|2S|G|2353
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 57
- 60S ribosomal protein L17
- Chain 59
- 60S ribosomal protein L19
- Chain 71
- 60S ribosomal protein L31
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