J4_3J77_004
3D structure
- PDB id
- 3J77 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- CUAUG*CGUC*GAG*CGUGUG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J77_004 not in the Motif Atlas
- Homologous match to J4_8P9A_013
- Geometric discrepancy: 0.2103
- The information below is about J4_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_12410.1
- Basepair signature
- cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J77|1|2S|C|185
3J77|1|2S|U|186
3J77|1|2S|A|187
3J77|1|2S|U|188
3J77|1|2S|G|189
*
3J77|1|2S|C|205
3J77|1|2S|G|206
3J77|1|2S|U|207
3J77|1|2S|C|208
*
3J77|1|2S|G|212
3J77|1|2S|A|213
3J77|1|2S|G|214
*
3J77|1|2S|C|226
3J77|1|2S|G|227
3J77|1|2S|U|228
3J77|1|2S|G|229
3J77|1|2S|U|230
3J77|1|2S|G|231
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 76
- 60S ribosomal protein L26
- Chain 8S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L4
- 60S ribosomal protein L4
Coloring options: