J4_3J78_007
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J78_007 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.1705
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_07509.2
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
3J78|1|2S|G|2130
3J78|1|2S|A|2131
3J78|1|2S|C|2132
3J78|1|2S|U|2133
3J78|1|2S|G|2134
*
3J78|1|2S|C|2146
3J78|1|2S|A|2147
3J78|1|2S|U|2148
3J78|1|2S|A|2149
3J78|1|2S|G|2150
*
3J78|1|2S|U|2186
3J78|1|2S|G|2187
3J78|1|2S|A|2188
3J78|1|2S|U|2189
3J78|1|2S|U|2190
*
3J78|1|2S|A|2317
3J78|1|2S|U|2318
3J78|1|2S|U|2319
3J78|1|2S|A|2320
3J78|1|2S|A|2321
3J78|1|2S|C|2322
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 1S
- Small subunit ribosomal RNA; SSU rRNA
- Chain 91
- 60S ribosomal protein L41
- Chain 93
- 60S ribosomal protein L43
- Chain L2
- 60S ribosomal protein L2
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