J4_3J78_012

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

3J78|1|PT|U|8, 3J78|1|PT|U|48, 3J78|1|PT|C|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J78_012 not in the Motif Atlas

Homologous match to J4_4TUE_004

Geometric discrepancy: 0.2021

The information below is about J4_4TUE_004

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

3J78|1|PT|G|7
3J78|1|PT|U|8
3J78|1|PT|G|9
3J78|1|PT|G|10
*
3J78|1|PT|C|26
3J78|1|PT|G|27
3J78|1|PT|U|28
*
3J78|1|PT|A|44
3J78|1|PT|A|45
3J78|1|PT|G|46
3J78|1|PT|G|47
3J78|1|PT|U|48
3J78|1|PT|C|49
3J78|1|PT|G|50
*
3J78|1|PT|C|66
3J78|1|PT|C|67

Current chains

Chain PT

P/E-site initiator transfer RNAfMet

Nearby chains

Chain 1S

Small subunit ribosomal RNA; SSU rRNA

Chain 2S

Large subunit ribosomal RNA; LSU rRNA

Chain 60

60S ribosomal protein L10