J4_3J79_001
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UC*GAGUCG*CUAAUACG*UAAA
- Length
- 20 nucleotides
- Bulged bases
- 3J79|1|A|C|306
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J79_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.2187
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
3J79|1|A|U|112
3J79|1|A|C|113
*
3J79|1|A|G|274
3J79|1|A|A|275
3J79|1|A|G|276
3J79|1|A|U|277
3J79|1|A|C|278
3J79|1|A|G|279
*
3J79|1|A|C|300
3J79|1|A|U|301
3J79|1|A|A|302
3J79|1|A|A|303
3J79|1|A|U|304
3J79|1|A|A|305
3J79|1|A|C|306
3J79|1|A|G|307
*
3J79|1|A|U|324
3J79|1|A|A|325
3J79|1|A|A|326
3J79|1|A|A|327
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain 3
- 60S ribosomal protein uL29
- Chain L
- 60S ribosomal protein eL13
- Chain P
- 60S ribosomal protein eL15
- Chain b
- 60S ribosomal protein eL36
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