J4_3J79_003
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAACUAU*AG*UAAAU*AG
- Length
- 16 nucleotides
- Bulged bases
- 3J79|1|A|A|1601, 3J79|1|A|U|1604, 3J79|1|A|A|2147
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J79_003 not in the Motif Atlas
- Homologous match to J4_8P9A_014
- Geometric discrepancy: 0.3793
- The information below is about J4_8P9A_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_87855.1
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J79|1|A|C|1600
3J79|1|A|A|1601
3J79|1|A|A|1602
3J79|1|A|C|1603
3J79|1|A|U|1604
3J79|1|A|A|1605
3J79|1|A|U|1606
*
3J79|1|A|A|1624
3J79|1|A|G|1625
*
3J79|1|A|U|2144
3J79|1|A|A|2145
3J79|1|A|A|2146
3J79|1|A|A|2147
3J79|1|A|U|2148
*
3J79|1|A|A|2645
3J79|1|A|G|2646
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain 7
- 60S ribosomal protein eL31
- Chain T
- 60S ribosomal protein eL19
- Chain W
- 60S ribosomal protein uL22
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