J4_3J79_004
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGUUU*AGUUAG*CC*GAGCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 3J79|1|A|U|1672
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J79_004 not in the Motif Atlas
- Homologous match to J4_8P9A_015
- Geometric discrepancy: 0.0972
- The information below is about J4_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
3J79|1|A|G|1641
3J79|1|A|G|1642
3J79|1|A|U|1643
3J79|1|A|U|1644
3J79|1|A|U|1645
*
3J79|1|A|A|1669
3J79|1|A|G|1670
3J79|1|A|U|1671
3J79|1|A|U|1672
3J79|1|A|A|1673
3J79|1|A|G|1674
*
3J79|1|A|C|1757
3J79|1|A|C|1758
*
3J79|1|A|G|2096
3J79|1|A|A|2097
3J79|1|A|G|2098
3J79|1|A|C|2099
3J79|1|A|G|2100
3J79|1|A|U|2101
3J79|1|A|A|2102
3J79|1|A|C|2103
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain 3
- 60S ribosomal protein uL29
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain T
- 60S ribosomal protein eL19
- Chain Y
- 60S ribosomal protein uL23
- Chain a
- 60S ribosomal protein eL34
- Chain c
- 60S ribosomal protein eL37
- Chain d
- 60S ribosomal protein eL38
- Chain e
- 60S ribosomal protein eL39
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