3D structure

PDB id
3J79 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GACUG*CAUAG*UGAUU*AUUAAC
Length
21 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_3J79_006 not in the Motif Atlas
Homologous match to J4_8P9A_017
Geometric discrepancy: 0.0701
The information below is about J4_8P9A_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_07509.2
Basepair signature
cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
Number of instances in this motif group
3

Unit IDs

3J79|1|A|G|2423
3J79|1|A|A|2424
3J79|1|A|C|2425
3J79|1|A|U|2426
3J79|1|A|G|2427
*
3J79|1|A|C|2439
3J79|1|A|A|2440
3J79|1|A|U|2441
3J79|1|A|A|2442
3J79|1|A|G|2443
*
3J79|1|A|U|2479
3J79|1|A|G|2480
3J79|1|A|A|2481
3J79|1|A|U|2482
3J79|1|A|U|2483
*
3J79|1|A|A|2610
3J79|1|A|U|2611
3J79|1|A|U|2612
3J79|1|A|A|2613
3J79|1|A|A|2614
3J79|1|A|C|2615

Current chains

Chain A
28S ribosomal RNA

Nearby chains

Chain D
60S ribosomal protein uL2
Chain g
60S ribosomal protein eL41
Chain h
60S ribosomal protein eL43

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.8591 s