J4_3J79_006
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_3J79_006 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.0701
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_07509.2
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
3J79|1|A|G|2423
3J79|1|A|A|2424
3J79|1|A|C|2425
3J79|1|A|U|2426
3J79|1|A|G|2427
*
3J79|1|A|C|2439
3J79|1|A|A|2440
3J79|1|A|U|2441
3J79|1|A|A|2442
3J79|1|A|G|2443
*
3J79|1|A|U|2479
3J79|1|A|G|2480
3J79|1|A|A|2481
3J79|1|A|U|2482
3J79|1|A|U|2483
*
3J79|1|A|A|2610
3J79|1|A|U|2611
3J79|1|A|U|2612
3J79|1|A|A|2613
3J79|1|A|A|2614
3J79|1|A|C|2615
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein uL2
- Chain g
- 60S ribosomal protein eL41
- Chain h
- 60S ribosomal protein eL43
Coloring options: