J4_3J7Z_008

3D structure

PDB id

3J7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmCL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J7Z_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0535

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

3J7Z|1|A|A|1772
3J7Z|1|A|A|1773
3J7Z|1|A|C|1774
3J7Z|1|A|U|1775
3J7Z|1|A|G|1776
*
3J7Z|1|A|C|1788
3J7Z|1|A|A|1789
3J7Z|1|A|C|1790
3J7Z|1|A|A|1791
3J7Z|1|A|G|1792
*
3J7Z|1|A|U|1827
3J7Z|1|A|G|1828
3J7Z|1|A|A|1829
3J7Z|1|A|C|1830
*
3J7Z|1|A|G|1975
3J7Z|1|A|U|1976
3J7Z|1|A|A|1977
3J7Z|1|A|A|1978
3J7Z|1|A|U|1979

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2