J4_3J8G_001

3D structure

PDB id

3J8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

3J8G|1|B|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J8G_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.3015

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

3J8G|1|B|C|268
3J8G|1|B|C|269
*
3J8G|1|B|G|370
3J8G|1|B|A|371
3J8G|1|B|G|372
3J8G|1|B|U|373
3J8G|1|B|A|374
3J8G|1|B|G|375
*
3J8G|1|B|U|399
3J8G|1|B|G|400
3J8G|1|B|A|401
3J8G|1|B|A|402
3J8G|1|B|U|403
3J8G|1|B|A|404
3J8G|1|B|U|405
3J8G|1|B|G|406
*
3J8G|1|B|C|421
3J8G|1|B|A|422
3J8G|1|B|A|423
3J8G|1|B|G|424

Current chains

Chain B

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L28

Chain H

50S ribosomal protein L9