J4_3J8G_008

3D structure

PDB id

3J8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J8G_008 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.1598

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

3J8G|1|B|A|1772
3J8G|1|B|A|1773
3J8G|1|B|C|1774
3J8G|1|B|U|1775
3J8G|1|B|G|1776
*
3J8G|1|B|C|1788
3J8G|1|B|A|1789
3J8G|1|B|C|1790
3J8G|1|B|A|1791
3J8G|1|B|G|1792
*
3J8G|1|B|U|1827
3J8G|1|B|G|1828
3J8G|1|B|A|1829
3J8G|1|B|C|1830
*
3J8G|1|B|G|1975
3J8G|1|B|U|1976
3J8G|1|B|A|1977
3J8G|1|B|A|1978
3J8G|1|B|U|1979

Current chains

Chain B

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2