J4_3J9W_009

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

3J9W|1|BA|U|1380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J9W_009 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.1127

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

3J9W|1|BA|G|1349
3J9W|1|BA|U|1350
3J9W|1|BA|U|1351
3J9W|1|BA|U|1352
3J9W|1|BA|C|1353
*
3J9W|1|BA|G|1377
3J9W|1|BA|G|1378
3J9W|1|BA|U|1379
3J9W|1|BA|U|1380
3J9W|1|BA|A|1381
3J9W|1|BA|G|1382
*
3J9W|1|BA|C|1443
3J9W|1|BA|C|1444
*
3J9W|1|BA|G|1642
3J9W|1|BA|C|1643
3J9W|1|BA|C|1644
3J9W|1|BA|C|1645
3J9W|1|BA|G|1646
3J9W|1|BA|U|1647
3J9W|1|BA|A|1648
3J9W|1|BA|C|1649

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B6

50S ribosomal protein bL34

Chain BW

50S ribosomal protein uL23