J4_3J9W_015

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J9W_015 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.22

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

3J9W|1|BA|G|2672
3J9W|1|BA|A|2673
3J9W|1|BA|G|2674
3J9W|1|BA|C|2675
*
3J9W|1|BA|G|2703
3J9W|1|BA|A|2704
3J9W|1|BA|C|2705
*
3J9W|1|BA|G|2760
3J9W|1|BA|G|2761
3J9W|1|BA|A|2762
3J9W|1|BA|C|2763
3J9W|1|BA|G|2764
*
3J9W|1|BA|C|2798
3J9W|1|BA|C|2799
3J9W|1|BA|C|2800

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein uL3

Chain BM

50S ribosomal protein uL13

Chain BN

50S ribosomal protein uL14