J4_3J9Y_007

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J9Y_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0525

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

3J9Y|1|A|A|1772
3J9Y|1|A|A|1773
3J9Y|1|A|C|1774
3J9Y|1|A|U|1775
3J9Y|1|A|G|1776
*
3J9Y|1|A|C|1788
3J9Y|1|A|A|1789
3J9Y|1|A|C|1790
3J9Y|1|A|A|1791
3J9Y|1|A|G|1792
*
3J9Y|1|A|U|1827
3J9Y|1|A|G|1828
3J9Y|1|A|A|1829
3J9Y|1|A|C|1830
*
3J9Y|1|A|G|1975
3J9Y|1|A|U|1976
3J9Y|1|A|A|1977
3J9Y|1|A|A|1978
3J9Y|1|A|U|1979

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2