J4_3J9Z_001

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

3J9Z|1|LA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_3J9Z_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.2964

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

3J9Z|1|LA|C|268
3J9Z|1|LA|C|269
*
3J9Z|1|LA|G|370
3J9Z|1|LA|A|371
3J9Z|1|LA|G|372
3J9Z|1|LA|U|373
3J9Z|1|LA|A|374
3J9Z|1|LA|G|375
*
3J9Z|1|LA|U|399
3J9Z|1|LA|G|400
3J9Z|1|LA|A|401
3J9Z|1|LA|A|402
3J9Z|1|LA|U|403
3J9Z|1|LA|A|404
3J9Z|1|LA|U|405
3J9Z|1|LA|G|406
*
3J9Z|1|LA|C|421
3J9Z|1|LA|A|422
3J9Z|1|LA|A|423
3J9Z|1|LA|G|424

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L9

50S ribosomal protein L9

Chain LV

50S ribosomal protein L28